Win10 update causing issues

Is anyone else having woin 10 update on their server, only to forget all the layouts media etc? How do i a) stop this from occurring and b) restore all of the files and layouts?

This is Docker on Windows 10?

If so, please read the special considerations section of the install guide which explains this, and how to restore:
http://xibo.org.uk/manual-tempel/en/install_docker_win10_64bit.html#special_considerations