I totally forgot about going that route. Is really simple on the Synology NAS.
I ran xtr.php, It did look to force all the maintenance scripts, but they all took less then a second, and it appears nothing was done. Notifications are still there, stats still seems huge. I did not get any output on the console, not sure if I should have. I also tried enabling logging, running the xtr.php, but I didn’t get anything in the logs.